Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01949.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3199
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33


Found at i:1028 original size:57 final size:57

Alignment explanation


    Indices: 940--1054  Score: 230
    Period size: 57  Copynumber: 2.0  Consensus size: 57

        930 AATCATAACC

                                                                     
        940 TTTGCTTTATAAATAACTAGAGAGAATGGTGTTGACATTTAAAACCACATTTTTTTT
          1 TTTGCTTTATAAATAACTAGAGAGAATGGTGTTGACATTTAAAACCACATTTTTTTT

                                                                     
        997 TTTGCTTTATAAATAACTAGAGAGAATGGTGTTGACATTTAAAACCACATTTTTTTT
          1 TTTGCTTTATAAATAACTAGAGAGAATGGTGTTGACATTTAAAACCACATTTTTTTT

             
       1054 T
          1 T

       1055 CCAGATTATA


Statistics
Matches: 58,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  57   58  1.00

ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43


Consensus pattern (57 bp):   
TTTGCTTTATAAATAACTAGAGAGAATGGTGTTGACATTTAAAACCACATTTTTTTT

Done.