Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01950.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 525

Length: 876
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.34


Found at i:813 original size:10 final size:10

Alignment explanation


    Indices: 756--820  Score: 51
    Period size: 10  Copynumber: 6.4  Consensus size: 10

        746 GTTTCTTGAC

                     *
        756 ATTTTTATAC
          1 ATTTTTATAT

                     *
        766 ATTTTT-TAA
          1 ATTTTTATAT

                        
        775 ATTTATTATTAT
          1 ATTT-TTA-TAT

                 * *  
        787 ATTTTAAAAT
          1 ATTTTTATAT

              *     * 
        797 ATATTTATGT
          1 ATTTTTATAT

                      
        807 ATTTTTATAT
          1 ATTTTTATAT

                
        817 ATTT
          1 ATTT

        821 CAAATTAAGA


Statistics
Matches: 42,  Mismatches: 10, Indels: 6
        0.72            0.17        0.10

Matches are distributed among these distances:
   9    6  0.14
  10   28  0.67
  11    2  0.05
  12    6  0.14

ACGTcount: A:0.34, C:0.02, G:0.02, T:0.63


Consensus pattern (10 bp):   
ATTTTTATAT
Done.