Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01957.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2367
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.29


Found at i:93 original size:2 final size:2

Alignment explanation


    Indices: 80--141  Score: 115
    Period size: 2  Copynumber: 31.0  Consensus size: 2

         70 CACTGATTCC

                   *                                                      
         80 CT CT CC CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT

                                         
        122 CT CT CT CT CT CT CT CT CT CT
          1 CT CT CT CT CT CT CT CT CT CT

        142 TATTTGGCTC


Statistics
Matches: 58,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   2   58  1.00

ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48


Consensus pattern (2 bp):   
CT

Done.