Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01964.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 549

Length: 916
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33


Found at i:794 original size:16 final size:16

Alignment explanation


    Indices: 770--802  Score: 57
    Period size: 16  Copynumber: 2.1  Consensus size: 16

        760 TAGGACCTTA

                *           
        770 TGGGTTAAGTGTTTAT
          1 TGGGCTAAGTGTTTAT

                            
        786 TGGGCTAAGTGTTTAT
          1 TGGGCTAAGTGTTTAT

             
        802 T
          1 T

        803 TATGTAATTT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.18, C:0.03, G:0.30, T:0.48


Consensus pattern (16 bp):   
TGGGCTAAGTGTTTAT
Done.