Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01967.R1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3815
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29


Found at i:1554 original size:24 final size:24

Alignment explanation


    Indices: 1527--1581  Score: 101
    Period size: 24  Copynumber: 2.3  Consensus size: 24

       1517 AGTGCTTAGG

                                    
       1527 TGGCTCTAAAGATGCAAAGGACAA
          1 TGGCTCTAAAGATGCAAAGGACAA

                                    
       1551 TGGCTCTAAAGATGCAAAGGACAA
          1 TGGCTCTAAAGATGCAAAGGACAA

              *    
       1575 TGACTCT
          1 TGGCTCT

       1582 TACAGTTTCT


Statistics
Matches: 30,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  24   30  1.00

ACGTcount: A:0.38, C:0.18, G:0.24, T:0.20


Consensus pattern (24 bp):   
TGGCTCTAAAGATGCAAAGGACAA
Done.