Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01974.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3519
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28


Found at i:211 original size:10 final size:10

Alignment explanation


    Indices: 179--217  Score: 51
    Period size: 10  Copynumber: 3.8  Consensus size: 10

        169 ATTACTCATT

                      
        179 AACAAAAAAA
          1 AACAAAAAAA

              *       
        189 AAAAAAAAAA
          1 AACAAAAAAA

                   *  
        199 AACAAAACAA
          1 AACAAAAAAA

                     
        209 AACAGAAAA
          1 AACA-AAAA

        218 CTAGTAATTA


Statistics
Matches: 24,  Mismatches: 4, Indels: 1
        0.83            0.14        0.03

Matches are distributed among these distances:
  10   21  0.88
  11    3  0.12

ACGTcount: A:0.87, C:0.10, G:0.03, T:0.00


Consensus pattern (10 bp):   
AACAAAAAAA
Done.