Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01980.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3219
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35


Found at i:2458 original size:31 final size:31

Alignment explanation


    Indices: 2420--2478  Score: 102
    Period size: 31  Copynumber: 1.9  Consensus size: 31

       2410 TAAACTGTAT

                                            
       2420 GCATTAGGGGATAGT-TCCAGTTATGCATTCA
          1 GCATTAGGGGATAGTAT-CAGTTATGCATTCA

                                        
       2451 GCATTAGGGGATAGTATCAGTTATGCAT
          1 GCATTAGGGGATAGTATCAGTTATGCAT

       2479 CTAGGTTTGT


Statistics
Matches: 27,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
  31   26  0.96
  32    1  0.04

ACGTcount: A:0.27, C:0.14, G:0.27, T:0.32


Consensus pattern (31 bp):   
GCATTAGGGGATAGTATCAGTTATGCATTCA
Done.