Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01982.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 906

Length: 1510
ACGTcount: A:0.32, C:0.14, G:0.28, T:0.26


Found at i:318 original size:6 final size:6

Alignment explanation


    Indices: 263--315  Score: 97
    Period size: 6  Copynumber: 8.8  Consensus size: 6

        253 AGGCATGGAC

                                                                  *
        263 GATGAA GATGAA GATGAA GATGAA GATGAA GATGAA GATGAA GATGAT
          1 GATGAA GATGAA GATGAA GATGAA GATGAA GATGAA GATGAA GATGAA

                 
        311 GATGA
          1 GATGA

        316 TGACGAGGAG


Statistics
Matches: 46,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
   6   46  1.00

ACGTcount: A:0.47, C:0.00, G:0.34, T:0.19


Consensus pattern (6 bp):   
GATGAA
Done.