Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01990.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3628
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31


Found at i:3427 original size:9 final size:9

Alignment explanation


    Indices: 3413--3444  Score: 55
    Period size: 9  Copynumber: 3.6  Consensus size: 9

       3403 ATTGTGCAGT

                     
       3413 GCAGCAGCG
          1 GCAGCAGCG

                     
       3422 GCAGCAGCG
          1 GCAGCAGCG

                    *
       3431 GCAGCAGCA
          1 GCAGCAGCG

                 
       3440 GCAGC
          1 GCAGC

       3445 TGTTTGGATT


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   9   22  1.00

ACGTcount: A:0.25, C:0.34, G:0.41, T:0.00


Consensus pattern (9 bp):   
GCAGCAGCG
Done.