Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01996.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3430
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30


Found at i:1613 original size:2 final size:2

Alignment explanation


    Indices: 1606--1647  Score: 52
    Period size: 2  Copynumber: 22.0  Consensus size: 2

       1596 ATGTGGTACT

                                             *     *                      
       1606 TC TC TC TC TC TC TC TC TC TC TC CC TC CC T- TC -C TC TC TC TC
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC

              
       1646 TC
          1 TC

       1648 ATTGTAATTT


Statistics
Matches: 34,  Mismatches: 4, Indels: 4
        0.81            0.10        0.10

Matches are distributed among these distances:
   1    2  0.06
   2   32  0.94

ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45


Consensus pattern (2 bp):   
TC

Done.