Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00012.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5791
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31


Found at i:130 original size:4 final size:4

Alignment explanation


    Indices: 121--145  Score: 50
    Period size: 4  Copynumber: 6.2  Consensus size: 4

        111 AGAAAAGGTA

                                           
        121 TAGC TAGC TAGC TAGC TAGC TAGC T
          1 TAGC TAGC TAGC TAGC TAGC TAGC T

        146 CTAAAACATG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   21  1.00

ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28


Consensus pattern (4 bp):   
TAGC

Found at i:2722 original size:5 final size:5

Alignment explanation


    Indices: 2714--2756  Score: 77
    Period size: 5  Copynumber: 8.4  Consensus size: 5

       2704 AAGCAACTCT

                                                               
       2714 TTGTC TTGTC TTGTC TTGTC TTGTC TTGTC TTGTC TTGGTC TT
          1 TTGTC TTGTC TTGTC TTGTC TTGTC TTGTC TTGTC TT-GTC TT

       2757 TAAGTAACCT


Statistics
Matches: 37,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
   5   32  0.86
   6    5  0.14

ACGTcount: A:0.00, C:0.19, G:0.21, T:0.60


Consensus pattern (5 bp):   
TTGTC

Done.