Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02028.P3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2155
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33


Found at i:863 original size:46 final size:47

Alignment explanation


    Indices: 810--901  Score: 177
    Period size: 46  Copynumber: 2.0  Consensus size: 47

        800 TTATCTGTAG

                                                           
        810 AGATGTTTAATACAAGCTTGCAAATGTCACTGAATTG-CCATCTCAA
          1 AGATGTTTAATACAAGCTTGCAAATGTCACTGAATTGCCCATCTCAA

                                                          
        856 AGATGTTTAATACAAGCTTGCAAATGTCACTGAATTGCCCATCTCA
          1 AGATGTTTAATACAAGCTTGCAAATGTCACTGAATTGCCCATCTCA

        902 CTTATCAGTG


Statistics
Matches: 45,  Mismatches: 0, Indels: 1
        0.98            0.00        0.02

Matches are distributed among these distances:
  46   37  0.82
  47    8  0.18

ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30


Consensus pattern (47 bp):   
AGATGTTTAATACAAGCTTGCAAATGTCACTGAATTGCCCATCTCAA
Done.