Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00012.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3685
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.30


Found at i:616 original size:5 final size:5

Alignment explanation


    Indices: 608--650  Score: 77
    Period size: 5  Copynumber: 8.4  Consensus size: 5

        598 AAGCAACTCT

                                                               
        608 TTGTC TTGTC TTGTC TTGTC TTGTC TTGTC TTGTC TTGGTC TT
          1 TTGTC TTGTC TTGTC TTGTC TTGTC TTGTC TTGTC TT-GTC TT

        651 TAAGTAACCT


Statistics
Matches: 37,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
   5   32  0.86
   6    5  0.14

ACGTcount: A:0.00, C:0.19, G:0.21, T:0.60


Consensus pattern (5 bp):   
TTGTC

Done.