Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02044.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 734

Length: 1224
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31


Found at i:329 original size:2 final size:2

Alignment explanation


    Indices: 324--353  Score: 60
    Period size: 2  Copynumber: 15.0  Consensus size: 2

        314 TGTATATATA

                                                        
        324 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
          1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG

        354 CATGTGTTTT


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   28  1.00

ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50


Consensus pattern (2 bp):   
TG

Found at i:588 original size:15 final size:15

Alignment explanation


    Indices: 568--597  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        558 ATATGTAAGA

                           
        568 GTAGTGGATGCTGAT
          1 GTAGTGGATGCTGAT

                           
        583 GTAGTGGATGCTGAT
          1 GTAGTGGATGCTGAT

        598 TTCAATATAA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.20, C:0.07, G:0.40, T:0.33


Consensus pattern (15 bp):   
GTAGTGGATGCTGAT
Done.