Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02069.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 459

Length: 766
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31


Found at i:579 original size:21 final size:21

Alignment explanation


    Indices: 550--597  Score: 71
    Period size: 21  Copynumber: 2.3  Consensus size: 21

        540 GTGGTACGGT

                *                 
        550 GCTGGGGGGCTC-AGTTGCGGC
          1 GCTGAGGGGCTCGA-TTGCGGC

                                 
        571 GCTGAGGGGCTCGATTGCGGC
          1 GCTGAGGGGCTCGATTGCGGC

                  
        592 GCTGAG
          1 GCTGAG

        598 CGAATGGGGC


Statistics
Matches: 25,  Mismatches: 1, Indels: 2
        0.89            0.04        0.07

Matches are distributed among these distances:
  21   24  0.96
  22    1  0.04

ACGTcount: A:0.08, C:0.23, G:0.50, T:0.19


Consensus pattern (21 bp):   
GCTGAGGGGCTCGATTGCGGC
Done.