Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02071.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1958
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30


Found at i:1068 original size:137 final size:137

Alignment explanation


    Indices: 782--1056  Score: 532
    Period size: 137  Copynumber: 2.0  Consensus size: 137

        772 GAGTAGTCTC

                                                                             
        782 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
          1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC

                                                     *                       
        847 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
         66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCCGAAAAGGGCTCTGGCCCAGTACC

               *   
        912 ACTGTTA
        131 ACTATTA

                                                                             
        919 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
          1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC

                                                                             
        984 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCCGAAAAGGGCTCTGGCCCAGTACC
         66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCCGAAAAGGGCTCTGGCCCAGTACC

                   
       1049 ACTATTA
        131 ACTATTA

             
       1056 C
          1 C

       1057 GTGAATGGGC


Statistics
Matches: 136,  Mismatches: 2, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
 137  136  1.00

ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31


Consensus pattern (137 bp):   
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCCGAAAAGGGCTCTGGCCCAGTACC
ACTATTA
Done.