Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02078.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 914

Length: 1524
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38


Found at i:157 original size:68 final size:70

Alignment explanation


    Indices: 44--201  Score: 212
    Period size: 68  Copynumber: 2.2  Consensus size: 70

         34 CAACTTTACC

                            *                             *                  
         44 CTTCTCCCTCTTTTTCGTTCTCACGTCTGAAGCAACTTCTTTTTTTTATTCTTC-CC-ATTTCCT
          1 CTTCT-CCTCTTTTTCATTCTCACGTCTGAAGCAACTTCTTTTTTTCATTCTTCTCCTATTTCCT

                  
        107 TCCAAA
         65 TCCAAA

                              *           *  *                               
        113 CTTCTCCTCTTTTTCATTGTCACGTCTGAATCATCTTCTTTTTTTCATTCTTCTTCCTATTTCCT
          1 CTTCTCCTCTTTTTCATTCTCACGTCTGAAGCAACTTCTTTTTTTCATTCTTC-TCCTATTTCCT

                 *
        178 TCCAAC
         65 TCCAAA

             *                
        184 CATCTCTCTCTTTTTCAT
          1 CTTCTC-CTCTTTTTCAT

        202 GCTTCTATCC


Statistics
Matches: 78,  Mismatches: 7, Indels: 5
        0.87            0.08        0.06

Matches are distributed among these distances:
  68   43  0.55
  69    5  0.06
  70    2  0.03
  71   17  0.22
  72   11  0.14

ACGTcount: A:0.13, C:0.32, G:0.04, T:0.51


Consensus pattern (70 bp):   
CTTCTCCTCTTTTTCATTCTCACGTCTGAAGCAACTTCTTTTTTTCATTCTTCTCCTATTTCCTT
CCAAA
Done.