Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00014.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4984
ACGTcount: A:0.21, C:0.21, G:0.24, T:0.34


Found at i:4372 original size:42 final size:42

Alignment explanation


    Indices: 4313--4400  Score: 176
    Period size: 42  Copynumber: 2.1  Consensus size: 42

       4303 GCTGATGCTA

                                                      
       4313 ACTGGGGCTTGGATTTCGATGATCACCGGTCCACGTCTGGTT
          1 ACTGGGGCTTGGATTTCGATGATCACCGGTCCACGTCTGGTT

                                                      
       4355 ACTGGGGCTTGGATTTCGATGATCACCGGTCCACGTCTGGTT
          1 ACTGGGGCTTGGATTTCGATGATCACCGGTCCACGTCTGGTT

                
       4397 ACTG
          1 ACTG

       4401 TGTATATTTT


Statistics
Matches: 46,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  42   46  1.00

ACGTcount: A:0.15, C:0.24, G:0.31, T:0.31


Consensus pattern (42 bp):   
ACTGGGGCTTGGATTTCGATGATCACCGGTCCACGTCTGGTT
Done.