Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00018.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 989

Length: 1649
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30


Found at i:1545 original size:9 final size:9

Alignment explanation


    Indices: 1531--1583  Score: 79
    Period size: 9  Copynumber: 5.9  Consensus size: 9

       1521 TTCAATAAGA

                     
       1531 TTCTTTTTC
          1 TTCTTTTTC

                     
       1540 TTCTTTTTC
          1 TTCTTTTTC

                     
       1549 TTCTTTTTC
          1 TTCTTTTTC

                 *   
       1558 TTCTTCTTC
          1 TTCTTTTTC

                 *   
       1567 TTCTTCTTC
          1 TTCTTTTTC

              *     
       1576 TTATTTTT
          1 TTCTTTTT

       1584 GATTAATGGT


Statistics
Matches: 41,  Mismatches: 3, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   9   41  1.00

ACGTcount: A:0.02, C:0.23, G:0.00, T:0.75


Consensus pattern (9 bp):   
TTCTTTTTC

Found at i:1552 original size:3 final size:3

Alignment explanation


    Indices: 1531--1577  Score: 67
    Period size: 3  Copynumber: 15.7  Consensus size: 3

       1521 TTCAATAAGA

                  *           *           *                               
       1531 TTC TTT TTC TTC TTT TTC TTC TTT TTC TTC TTC TTC TTC TTC TTC TT
          1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT

       1578 ATTTTTGATT


Statistics
Matches: 38,  Mismatches: 6, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
   3   38  1.00

ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74


Consensus pattern (3 bp):   
TTC
Done.