Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02142.M2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5582
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32


Found at i:1252 original size:30 final size:30

Alignment explanation


    Indices: 1211--1283  Score: 137
    Period size: 30  Copynumber: 2.4  Consensus size: 30

       1201 ATAGGTTGAT

                *                         
       1211 ACACGGGCGTGTGTGGCCACTTCGAAGGGC
          1 ACACAGGCGTGTGTGGCCACTTCGAAGGGC

                                          
       1241 ACACAGGCGTGTGTGGCCACTTCGAAGGGC
          1 ACACAGGCGTGTGTGGCCACTTCGAAGGGC

                         
       1271 ACACAGGCGTGTG
          1 ACACAGGCGTGTG

       1284 GTTGGCTGTG


Statistics
Matches: 42,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  30   42  1.00

ACGTcount: A:0.19, C:0.26, G:0.38, T:0.16


Consensus pattern (30 bp):   
ACACAGGCGTGTGTGGCCACTTCGAAGGGC

Done.