Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02147.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3474
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30


Found at i:2651 original size:3 final size:3

Alignment explanation


    Indices: 2643--2668  Score: 52
    Period size: 3  Copynumber: 8.7  Consensus size: 3

       2633 AAGGGGTAAG

                                              
       2643 CAT CAT CAT CAT CAT CAT CAT CAT CA
          1 CAT CAT CAT CAT CAT CAT CAT CAT CA

       2669 GTTAATAACA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   23  1.00

ACGTcount: A:0.35, C:0.35, G:0.00, T:0.31


Consensus pattern (3 bp):   
CAT

Found at i:3322 original size:18 final size:17

Alignment explanation


    Indices: 3299--3349  Score: 59
    Period size: 19  Copynumber: 2.8  Consensus size: 17

       3289 AAATAGAAGA

                              
       3299 TATTATTTTATTTTGTTT
          1 TATTATTTTATTTT-TTT

                               
       3317 TATTATTTTTATTTATTTT
          1 TATTA-TTTTATTT-TTTT

                           
       3336 TATT-TTATTATTTT
          1 TATTATT-TTATTTT

       3350 AGGATTAAGC


Statistics
Matches: 30,  Mismatches: 0, Indels: 7
        0.81            0.00        0.19

Matches are distributed among these distances:
  17    3  0.10
  18   11  0.37
  19   15  0.50
  20    1  0.03

ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78


Consensus pattern (17 bp):   
TATTATTTTATTTTTTT

Found at i:3328 original size:24 final size:24

Alignment explanation


    Indices: 3305--3349  Score: 74
    Period size: 24  Copynumber: 1.9  Consensus size: 24

       3295 AAGATATTAT

                     *              
       3305 TTTA-TTTTGTTTTATTATTTTTA
          1 TTTATTTTTATTTTATTATTTTTA

                                  
       3328 TTTATTTTTATTTTATTATTTT
          1 TTTATTTTTATTTTATTATTTT

       3350 AGGATTAAGC


Statistics
Matches: 20,  Mismatches: 1, Indels: 1
        0.91            0.05        0.05

Matches are distributed among these distances:
  23    4  0.20
  24   16  0.80

ACGTcount: A:0.18, C:0.00, G:0.02, T:0.80


Consensus pattern (24 bp):   
TTTATTTTTATTTTATTATTTTTA
Done.