Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02147.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4298
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31


Found at i:4146 original size:18 final size:17

Alignment explanation


    Indices: 4123--4173  Score: 59
    Period size: 19  Copynumber: 2.8  Consensus size: 17

       4113 AAATAGAAGA

                              
       4123 TATTATTTTATTTTGTTT
          1 TATTATTTTATTTT-TTT

                               
       4141 TATTATTTTTATTTATTTT
          1 TATTA-TTTTATTT-TTTT

                           
       4160 TATT-TTATTATTTT
          1 TATTATT-TTATTTT

       4174 AGGATTAAGC


Statistics
Matches: 30,  Mismatches: 0, Indels: 7
        0.81            0.00        0.19

Matches are distributed among these distances:
  17    3  0.10
  18   11  0.37
  19   15  0.50
  20    1  0.03

ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78


Consensus pattern (17 bp):   
TATTATTTTATTTTTTT

Found at i:4152 original size:24 final size:24

Alignment explanation


    Indices: 4129--4173  Score: 74
    Period size: 24  Copynumber: 1.9  Consensus size: 24

       4119 AAGATATTAT

                     *              
       4129 TTTA-TTTTGTTTTATTATTTTTA
          1 TTTATTTTTATTTTATTATTTTTA

                                  
       4152 TTTATTTTTATTTTATTATTTT
          1 TTTATTTTTATTTTATTATTTT

       4174 AGGATTAAGC


Statistics
Matches: 20,  Mismatches: 1, Indels: 1
        0.91            0.05        0.05

Matches are distributed among these distances:
  23    4  0.20
  24   16  0.80

ACGTcount: A:0.18, C:0.00, G:0.02, T:0.80


Consensus pattern (24 bp):   
TTTATTTTTATTTTATTATTTTTA
Done.