Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02174.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1817
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27


Found at i:1533 original size:6 final size:6

Alignment explanation


    Indices: 1523--1575  Score: 97
    Period size: 6  Copynumber: 8.8  Consensus size: 6

       1513 ATGGTGGTTT

                 *                                                 
       1523 CCGAGT CCGAGA CCGAGA CCGAGA CCGAGA CCGAGA CCGAGA CCGAGA
          1 CCGAGA CCGAGA CCGAGA CCGAGA CCGAGA CCGAGA CCGAGA CCGAGA

                 
       1571 CCGAG
          1 CCGAG

       1576 GGAAGGGTTA


Statistics
Matches: 46,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
   6   46  1.00

ACGTcount: A:0.30, C:0.34, G:0.34, T:0.02


Consensus pattern (6 bp):   
CCGAGA

Done.