Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02175.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 518

Length: 864
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.29


Found at i:248 original size:26 final size:26

Alignment explanation


    Indices: 212--321  Score: 177
    Period size: 26  Copynumber: 4.2  Consensus size: 26

        202 TGATACAAAT

                                       
        212 TGATAATAGGTTAGGTAAATG-TTCAA
          1 TGATAATAGGTTAGGTAAATGTTTC-A

                                   *  
        238 TGATAATAGGTTAGGTAAATGTTCCA
          1 TGATAATAGGTTAGGTAAATGTTTCA

                   *                  
        264 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATAGGTTAGGTAAATGTTTCA

                   *                  
        290 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATAGGTTAGGTAAATGTTTCA

                  
        316 TGATAA
          1 TGATAA

        322 GAATTCCATG


Statistics
Matches: 80,  Mismatches: 3, Indels: 2
        0.94            0.04        0.02

Matches are distributed among these distances:
  26   78  0.98
  27    2  0.03

ACGTcount: A:0.35, C:0.05, G:0.25, T:0.36


Consensus pattern (26 bp):   
TGATAATAGGTTAGGTAAATGTTTCA

Done.