Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02207.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5505
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28


Found at i:57 original size:19 final size:19

Alignment explanation


    Indices: 29--77  Score: 62
    Period size: 19  Copynumber: 2.6  Consensus size: 19

         19 GTTTGGGGGA

                               
         29 AAAGAAAAGGAAAGAAAAG
          1 AAAGAAAAGGAAAGAAAAG

                 *      *     *
         48 AAAGAGAAGGAAGGAAAAA
          1 AAAGAAAAGGAAAGAAAAG

               *       
         67 AAAAAAAAGGA
          1 AAAGAAAAGGA

         78 GGACACAGAC


Statistics
Matches: 25,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  19   25  1.00

ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00


Consensus pattern (19 bp):   
AAAGAAAAGGAAAGAAAAG
Done.