Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02215.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 994

Length: 1657
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30


Found at i:67 original size:14 final size:13

Alignment explanation


    Indices: 33--78  Score: 56
    Period size: 13  Copynumber: 3.5  Consensus size: 13

         23 CTTTTTCCAG

                   *  *  
         33 TTTTCTTCTTCTT
          1 TTTTCTTTTTTTT

                         
         46 TTTTCTTTTTTTT
          1 TTTTCTTTTTTTT

                          
         59 TTTTCCTTTTTTTT
          1 TTTT-CTTTTTTTT

             *    
         73 TCTTCT
          1 TTTTCT

         79 CTCACTTTCT


Statistics
Matches: 29,  Mismatches: 3, Indels: 2
        0.85            0.09        0.06

Matches are distributed among these distances:
  13   17  0.59
  14   12  0.41

ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83


Consensus pattern (13 bp):   
TTTTCTTTTTTTT
Done.