Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga10g02218.F4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4236
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Found at i:2821 original size:39 final size:39
Alignment explanation
Indices: 2767--2846 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
2757 CGAATTCTAT
2767 GGTTCCCTTTTCATATTCAACTTGAATATGATACATATA
1 GGTTCCCTTTTCATATTCAACTTGAATATGATACATATA
2806 GGTTCCCTTTTCATATTCAACTTGAATATGATACATATA
1 GGTTCCCTTTTCATATTCAACTTGAATATGATACATATA
2845 GG
1 GG
2847 CTAGGACATT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.30, C:0.17, G:0.12, T:0.40
Consensus pattern (39 bp):
GGTTCCCTTTTCATATTCAACTTGAATATGATACATATA
Found at i:4041 original size:48 final size:48
Alignment explanation
Indices: 3985--4083 Score: 198
Period size: 48 Copynumber: 2.1 Consensus size: 48
3975 TTCAACTTGA
3985 AATAAAGCTGAAAATTACAGAGTTACAGAAGTTGTGAGATGTGACAAC
1 AATAAAGCTGAAAATTACAGAGTTACAGAAGTTGTGAGATGTGACAAC
4033 AATAAAGCTGAAAATTACAGAGTTACAGAAGTTGTGAGATGTGACAAC
1 AATAAAGCTGAAAATTACAGAGTTACAGAAGTTGTGAGATGTGACAAC
4081 AAT
1 AAT
4084 GCCATTTCTA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 51 1.00
ACGTcount: A:0.44, C:0.10, G:0.22, T:0.23
Consensus pattern (48 bp):
AATAAAGCTGAAAATTACAGAGTTACAGAAGTTGTGAGATGTGACAAC
Done.