Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02218.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3139
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.29


Found at i:2944 original size:48 final size:48

Alignment explanation


    Indices: 2888--2986  Score: 198
    Period size: 48  Copynumber: 2.1  Consensus size: 48

       2878 TTCAACTTGA

                                                            
       2888 AATAAAGCTGAAAATTACAGAGTTACAGAAGTTGTGAGATGTGACAAC
          1 AATAAAGCTGAAAATTACAGAGTTACAGAAGTTGTGAGATGTGACAAC

                                                            
       2936 AATAAAGCTGAAAATTACAGAGTTACAGAAGTTGTGAGATGTGACAAC
          1 AATAAAGCTGAAAATTACAGAGTTACAGAAGTTGTGAGATGTGACAAC

               
       2984 AAT
          1 AAT

       2987 GCCATTTCTA


Statistics
Matches: 51,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  48   51  1.00

ACGTcount: A:0.44, C:0.10, G:0.22, T:0.23


Consensus pattern (48 bp):   
AATAAAGCTGAAAATTACAGAGTTACAGAAGTTGTGAGATGTGACAAC
Done.