Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02228.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3199
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31


Found at i:1180 original size:78 final size:78

Alignment explanation


    Indices: 1092--1243  Score: 259
    Period size: 78  Copynumber: 1.9  Consensus size: 78

       1082 GAGTACTCCC

                                                                             
       1092 TGCATAGTTGTTGTCTCTTGTGCACAAGTTCAATGAGTTGTACATGAAGCTTGAAGAGTTGCATC
          1 TGCATAGTTGTTGTCTCTTGTGCACAAGTTCAATGAGTTGTACATGAAGCTTGAAGAGTTGCATC

              *          
       1157 ATCTCCTACGAGT
         66 ATATCCTACGAGT

                 *                *       *                  *               
       1170 TGCATTGTTGTTGTCTCTTGTGTACAAGTTTAATGAGTTGTACATGAAGGTTGAAGAGTTGCATC
          1 TGCATAGTTGTTGTCTCTTGTGCACAAGTTCAATGAGTTGTACATGAAGCTTGAAGAGTTGCATC

                     
       1235 ATATCCTAC
         66 ATATCCTAC

       1244 AAGTCACGAC


Statistics
Matches: 69,  Mismatches: 5, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  78   69  1.00

ACGTcount: A:0.24, C:0.16, G:0.23, T:0.37


Consensus pattern (78 bp):   
TGCATAGTTGTTGTCTCTTGTGCACAAGTTCAATGAGTTGTACATGAAGCTTGAAGAGTTGCATC
ATATCCTACGAGT
Done.