Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02232.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 736

Length: 1228
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.30


Found at i:638 original size:41 final size:41

Alignment explanation


    Indices: 581--663  Score: 166
    Period size: 41  Copynumber: 2.0  Consensus size: 41

        571 AAAAAGCAAG

                                                     
        581 TCGAAAACAAAAGAAACAGTAGTATTATTGCGAGCATGCTA
          1 TCGAAAACAAAAGAAACAGTAGTATTATTGCGAGCATGCTA

                                                     
        622 TCGAAAACAAAAGAAACAGTAGTATTATTGCGAGCATGCTA
          1 TCGAAAACAAAAGAAACAGTAGTATTATTGCGAGCATGCTA

             
        663 T
          1 T

        664 TGATCTTCAG


Statistics
Matches: 42,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  41   42  1.00

ACGTcount: A:0.43, C:0.14, G:0.19, T:0.23


Consensus pattern (41 bp):   
TCGAAAACAAAAGAAACAGTAGTATTATTGCGAGCATGCTA
Done.