Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02232.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1890
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33


Found at i:1300 original size:41 final size:41

Alignment explanation


    Indices: 1243--1325  Score: 166
    Period size: 41  Copynumber: 2.0  Consensus size: 41

       1233 AAAAAGCAAG

                                                     
       1243 TCGAAAACAAAAGAAACAGTAGTATTATTGCGAGCATGCTA
          1 TCGAAAACAAAAGAAACAGTAGTATTATTGCGAGCATGCTA

                                                     
       1284 TCGAAAACAAAAGAAACAGTAGTATTATTGCGAGCATGCTA
          1 TCGAAAACAAAAGAAACAGTAGTATTATTGCGAGCATGCTA

             
       1325 T
          1 T

       1326 TGATCTTCAG


Statistics
Matches: 42,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  41   42  1.00

ACGTcount: A:0.43, C:0.14, G:0.19, T:0.23


Consensus pattern (41 bp):   
TCGAAAACAAAAGAAACAGTAGTATTATTGCGAGCATGCTA
Done.