Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00022.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 828

Length: 1380
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31


Found at i:305 original size:15 final size:15

Alignment explanation


    Indices: 286--320  Score: 52
    Period size: 16  Copynumber: 2.3  Consensus size: 15

        276 AAAAACACCA

                            
        286 AAAAAAAGAAAGAAAG
          1 AAAAAAAGAAA-AAAG

                    *      
        302 AAAAAAAGGAAAAAG
          1 AAAAAAAGAAAAAAG

                
        317 AAAA
          1 AAAA

        321 CGGATGGGGA


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  15    8  0.44
  16   10  0.56

ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00


Consensus pattern (15 bp):   
AAAAAAAGAAAAAAG
Done.