Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02237.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 473

Length: 789
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28


Found at i:714 original size:33 final size:33

Alignment explanation


    Indices: 676--747  Score: 117
    Period size: 33  Copynumber: 2.2  Consensus size: 33

        666 TATTCATGAG

                   *  *                      
        676 AATGAAGGGTTGATTTTTCTCATGATTGGATGT
          1 AATGAAGCGTAGATTTTTCTCATGATTGGATGT

                  *                          
        709 AATGAATCGTAGATTTTTCTCATGATTGGATGT
          1 AATGAAGCGTAGATTTTTCTCATGATTGGATGT

                  
        742 AATGAA
          1 AATGAA

        748 TCGTTGTAAT


Statistics
Matches: 36,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  33   36  1.00

ACGTcount: A:0.29, C:0.07, G:0.24, T:0.40


Consensus pattern (33 bp):   
AATGAAGCGTAGATTTTTCTCATGATTGGATGT

Found at i:748 original size:33 final size:33

Alignment explanation


    Indices: 687--751  Score: 130
    Period size: 33  Copynumber: 2.0  Consensus size: 33

        677 ATGAAGGGTT

                                             
        687 GATTTTTCTCATGATTGGATGTAATGAATCGTA
          1 GATTTTTCTCATGATTGGATGTAATGAATCGTA

                                            
        720 GATTTTTCTCATGATTGGATGTAATGAATCGT
          1 GATTTTTCTCATGATTGGATGTAATGAATCGT

        752 TGTAATAGAA


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  33   32  1.00

ACGTcount: A:0.26, C:0.09, G:0.22, T:0.43


Consensus pattern (33 bp):   
GATTTTTCTCATGATTGGATGTAATGAATCGTA
Done.