Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02240.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4713
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28


Found at i:1264 original size:18 final size:18

Alignment explanation


    Indices: 1241--1309  Score: 56
    Period size: 18  Copynumber: 4.0  Consensus size: 18

       1231 TCCTCAAATG

                              
       1241 CAGCAGCCACAGCAACAT
          1 CAGCAGCCACAGCAACAT

                               
       1259 CAGCAG-CAGCAGC-A-A-
          1 CAGCAGCCA-CAGCAACAT

                 * *  *      *
       1274 CAGCAACTACTGCAACAA
          1 CAGCAGCCACAGCAACAT

                   *          
       1292 CAGCAGCTACAGCAACAT
          1 CAGCAGCCACAGCAACAT

       1310 GCTCAACAAC


Statistics
Matches: 40,  Mismatches: 6, Indels: 10
        0.71            0.11        0.18

Matches are distributed among these distances:
  15    8  0.20
  16    3  0.08
  17    4  0.10
  18   25  0.62

ACGTcount: A:0.41, C:0.35, G:0.17, T:0.07


Consensus pattern (18 bp):   
CAGCAGCCACAGCAACAT

Found at i:4159 original size:10 final size:10

Alignment explanation


    Indices: 4144--4169  Score: 52
    Period size: 10  Copynumber: 2.6  Consensus size: 10

       4134 CTCCAATTTG

                      
       4144 TTTTTTTGTT
          1 TTTTTTTGTT

                      
       4154 TTTTTTTGTT
          1 TTTTTTTGTT

                  
       4164 TTTTTT
          1 TTTTTT

       4170 GCAGATACTT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   16  1.00

ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92


Consensus pattern (10 bp):   
TTTTTTTGTT
Done.