Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02242.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 586

Length: 977
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31


Found at i:748 original size:3 final size:3

Alignment explanation


    Indices: 742--778  Score: 58
    Period size: 3  Copynumber: 12.7  Consensus size: 3

        732 AAAACAAAAA

                                                      *       
        742 AAC AAC AAC AAC AAC AAC AAC AAC -AC AAC AAA AAC AA
          1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA

        779 AAACTCAATC


Statistics
Matches: 31,  Mismatches: 2, Indels: 2
        0.89            0.06        0.06

Matches are distributed among these distances:
   2    2  0.06
   3   29  0.94

ACGTcount: A:0.70, C:0.30, G:0.00, T:0.00


Consensus pattern (3 bp):   
AAC

Done.