Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00025.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3557
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.30


Found at i:3469 original size:5 final size:5

Alignment explanation


    Indices: 3461--3486  Score: 52
    Period size: 5  Copynumber: 5.2  Consensus size: 5

       3451 TGAAATATTC

                                           
       3461 TCTTT TCTTT TCTTT TCTTT TCTTT T
          1 TCTTT TCTTT TCTTT TCTTT TCTTT T

       3487 GTTGGGTATT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   21  1.00

ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81


Consensus pattern (5 bp):   
TCTTT

Done.