Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00026.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 862

Length: 1437
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.30


Found at i:64 original size:4 final size:4

Alignment explanation


    Indices: 57--99  Score: 86
    Period size: 4  Copynumber: 10.8  Consensus size: 4

         47 TCGGTTCTGT

                                                                 
         57 CTGC CTGC CTGC CTGC CTGC CTGC CTGC CTGC CTGC CTGC CTG
          1 CTGC CTGC CTGC CTGC CTGC CTGC CTGC CTGC CTGC CTGC CTG

        100 TCCTTTTCTA


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   39  1.00

ACGTcount: A:0.00, C:0.49, G:0.26, T:0.26


Consensus pattern (4 bp):   
CTGC

Found at i:153 original size:3 final size:3

Alignment explanation


    Indices: 145--170  Score: 52
    Period size: 3  Copynumber: 8.7  Consensus size: 3

        135 ATTCATGTTC

                                              
        145 TCT TCT TCT TCT TCT TCT TCT TCT TC
          1 TCT TCT TCT TCT TCT TCT TCT TCT TC

        171 ATGGACTTGT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   23  1.00

ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65


Consensus pattern (3 bp):   
TCT

Done.