Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02280.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 911

Length: 1519
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32


Found at i:1043 original size:130 final size:132

Alignment explanation


    Indices: 889--1230  Score: 501
    Period size: 135  Copynumber: 2.6  Consensus size: 132

        879 CTACTCTTGT

                  *                                                          
        889 TCAACGGAGATAAGATCTGATATATTTAGCCTGCTTCACTCCTGCTCAGTGAAGATAAGGCTGAT
          1 TCAACGAAGATAAGATCTGATATATTTAGCCTGCTTCACTCCTGCTCAGTGAAGATAAGGCTGAT

                *               *                                      * *   
        954 GATTAGAATCTGCTCCATCATCAGTACGT-AG-AGATTCA-CCAAAATTCGATCTACTCTGTTCC
         66 GATTGGAATCTGCTCCATCACCAGTACGTGAGAAGATT-AGCCAAAATTCGATCTACTCCGCTCC

             * 
       1016 TGC
        130 TAC

                               *                                             
       1019 TCAACGAAGATAAGATCTGCTATATTTAGCCTGCTTCACTCCTGCTCAGTGAAGATAAGGCTGAT
          1 TCAACGAAGATAAGATCTGATATATTTAGCCTGCTTCACTCCTGCTCAGTGAAGATAAGGCTGAT

                               *                                     *       
       1084 GATTGGAATCTGCTCCATCGCCAGTACGTGGAGATAAGATTAGCCAAAATTCGATCTGCTCCGCT
         66 GATTGGAATCTGCTCCATCACCAGTACGT-GAG--AAGATTAGCCAAAATTCGATCTACTCCGCT

                 
       1149 CCTAC
        128 CCTAC

               *    *          *                    *                     *  
       1154 TCAGCGAAAATAAGATCTGTTATATTTAGCCTGCTTCACTTCTGCTCAGTGAAGATAAGGCTCAT
          1 TCAACGAAGATAAGATCTGATATATTTAGCCTGCTTCACTCCTGCTCAGTGAAGATAAGGCTGAT

                        
       1219 GATTGGAATCTG
         66 GATTGGAATCTG

       1231 TTATATGTAG


Statistics
Matches: 192,  Mismatches: 14, Indels: 7
        0.90            0.07        0.03

Matches are distributed among these distances:
 130   89  0.46
 132    2  0.01
 134    1  0.01
 135  100  0.52

ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30


Consensus pattern (132 bp):   
TCAACGAAGATAAGATCTGATATATTTAGCCTGCTTCACTCCTGCTCAGTGAAGATAAGGCTGAT
GATTGGAATCTGCTCCATCACCAGTACGTGAGAAGATTAGCCAAAATTCGATCTACTCCGCTCCT
AC

Found at i:1372 original size:30 final size:30

Alignment explanation


    Indices: 1331--1398  Score: 91
    Period size: 30  Copynumber: 2.3  Consensus size: 30

       1321 CTCCTAAACT

                *                         
       1331 ACCCCACTAAGCCACCCCACTAACTCCATC
          1 ACCCTACTAAGCCACCCCACTAACTCCATC

                        *      *      *  *
       1361 ACCCTACTAAGCTACCCCATTAACTCTATT
          1 ACCCTACTAAGCCACCCCACTAACTCCATC

                    
       1391 ACCCTACT
          1 ACCCTACT

       1399 TGTCACCATG


Statistics
Matches: 33,  Mismatches: 5, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  30   33  1.00

ACGTcount: A:0.29, C:0.46, G:0.03, T:0.22


Consensus pattern (30 bp):   
ACCCTACTAAGCCACCCCACTAACTCCATC
Done.