Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02284.F7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3690
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30


Found at i:1515 original size:35 final size:35

Alignment explanation


    Indices: 1469--1537  Score: 138
    Period size: 35  Copynumber: 2.0  Consensus size: 35

       1459 TGAATTGGTT

                                               
       1469 GCTAAAATTTGCTTGATCATAATCACTTTGAAATC
          1 GCTAAAATTTGCTTGATCATAATCACTTTGAAATC

                                              
       1504 GCTAAAATTTGCTTGATCATAATCACTTTGAAAT
          1 GCTAAAATTTGCTTGATCATAATCACTTTGAAAT

       1538 ACTATGTAAC


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  35   34  1.00

ACGTcount: A:0.35, C:0.16, G:0.12, T:0.38


Consensus pattern (35 bp):   
GCTAAAATTTGCTTGATCATAATCACTTTGAAATC
Done.