Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02287.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 874

Length: 1458
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31


Found at i:1100 original size:18 final size:18

Alignment explanation


    Indices: 1077--1112  Score: 63
    Period size: 18  Copynumber: 2.0  Consensus size: 18

       1067 TTACTGCAGC

                              
       1077 GGACAACTCGACCCGCGT
          1 GGACAACTCGACCCGCGT

                         *    
       1095 GGACAACTCGACCTGCGT
          1 GGACAACTCGACCCGCGT

       1113 AGGGTAACCT


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.22, C:0.36, G:0.28, T:0.14


Consensus pattern (18 bp):   
GGACAACTCGACCCGCGT
Done.