Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02287.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2071
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.33


Found at i:1713 original size:18 final size:18

Alignment explanation


    Indices: 1690--1725  Score: 63
    Period size: 18  Copynumber: 2.0  Consensus size: 18

       1680 TTACTGCAGC

                              
       1690 GGACAACTCGACCCGCGT
          1 GGACAACTCGACCCGCGT

                         *    
       1708 GGACAACTCGACCTGCGT
          1 GGACAACTCGACCCGCGT

       1726 AGGGTAACCT


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.22, C:0.36, G:0.28, T:0.14


Consensus pattern (18 bp):   
GGACAACTCGACCCGCGT
Done.