Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02289.N7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 521

Length: 869
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.37


Found at i:313 original size:80 final size:80

Alignment explanation


    Indices: 180--341  Score: 324
    Period size: 80  Copynumber: 2.0  Consensus size: 80

        170 CTTGTTCACT

                                                                             
        180 TCTCTCACCTATCAATGAATGCCAATTACCTTTCACATTAGTCAATTATATACCTTTCAAACCTT
          1 TCTCTCACCTATCAATGAATGCCAATTACCTTTCACATTAGTCAATTATATACCTTTCAAACCTT

                           
        245 TTGGTTTCATGAATA
         66 TTGGTTTCATGAATA

                                                                             
        260 TCTCTCACCTATCAATGAATGCCAATTACCTTTCACATTAGTCAATTATATACCTTTCAAACCTT
          1 TCTCTCACCTATCAATGAATGCCAATTACCTTTCACATTAGTCAATTATATACCTTTCAAACCTT

                           
        325 TTGGTTTCATGAATA
         66 TTGGTTTCATGAATA

              
        340 TC
          1 TC

        342 AAATATTTCT


Statistics
Matches: 82,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  80   82  1.00

ACGTcount: A:0.30, C:0.24, G:0.07, T:0.39


Consensus pattern (80 bp):   
TCTCTCACCTATCAATGAATGCCAATTACCTTTCACATTAGTCAATTATATACCTTTCAAACCTT
TTGGTTTCATGAATA
Done.