Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00029.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3182
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34


Found at i:2435 original size:17 final size:17

Alignment explanation


    Indices: 2413--2448  Score: 72
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       2403 TCTTTTCTAC

                             
       2413 AATGGTATTCAATATGG
          1 AATGGTATTCAATATGG

                             
       2430 AATGGTATTCAATATGG
          1 AATGGTATTCAATATGG

              
       2447 AA
          1 AA

       2449 ACTGACTTCC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   19  1.00

ACGTcount: A:0.39, C:0.06, G:0.22, T:0.33


Consensus pattern (17 bp):   
AATGGTATTCAATATGG
Done.