Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02302.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 330

Length: 550
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32


Found at i:282 original size:54 final size:54

Alignment explanation


    Indices: 198--305  Score: 173
    Period size: 54  Copynumber: 2.0  Consensus size: 54

        188 TGTTCCAGCT

                                     *                  *         
        198 CCGCCGCCCGGTGCACCAACCACCTTTTTCCCATCTCCTCCACATACCAAGCCC
          1 CCGCCGCCCGGTGCACCAACCACCTCTTTCCCATCTCCTCCACACACCAAGCCC

                            *                                      
        252 CCGCCGCCC-GTGGCAGCAACCACCTCTTTCCCATCTCCTCCACACACCAAGCCC
          1 CCGCCGCCCGGT-GCACCAACCACCTCTTTCCCATCTCCTCCACACACCAAGCCC

        306 GACAACTTAG


Statistics
Matches: 50,  Mismatches: 3, Indels: 2
        0.91            0.05        0.04

Matches are distributed among these distances:
  53    2  0.04
  54   48  0.96

ACGTcount: A:0.19, C:0.53, G:0.12, T:0.17


Consensus pattern (54 bp):   
CCGCCGCCCGGTGCACCAACCACCTCTTTCCCATCTCCTCCACACACCAAGCCC
Done.