Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02304.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2514
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.30


Found at i:184 original size:12 final size:13

Alignment explanation


    Indices: 160--188  Score: 51
    Period size: 12  Copynumber: 2.3  Consensus size: 13

        150 TCAAAATCAC

                         
        160 CCTTTTGTTTTCT
          1 CCTTTTGTTTTCT

                         
        173 CCTTTT-TTTTCT
          1 CCTTTTGTTTTCT

                
        185 CCTT
          1 CCTT

        189 CTTTACAGTC


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  12   10  0.62
  13    6  0.38

ACGTcount: A:0.00, C:0.28, G:0.03, T:0.69


Consensus pattern (13 bp):   
CCTTTTGTTTTCT
Done.