Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02307.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4234
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.31


Found at i:3885 original size:28 final size:28

Alignment explanation


    Indices: 3852--3906  Score: 101
    Period size: 28  Copynumber: 2.0  Consensus size: 28

       3842 TAGTTCATCA

                  *                     
       3852 ACAACCGCAATTATCTAAGAATGTTTGG
          1 ACAACCACAATTATCTAAGAATGTTTGG

                                       
       3880 ACAACCACAATTATCTAAGAATGTTTG
          1 ACAACCACAATTATCTAAGAATGTTTG

       3907 AACTGGACCT


Statistics
Matches: 26,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  28   26  1.00

ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29


Consensus pattern (28 bp):   
ACAACCACAATTATCTAAGAATGTTTGG
Done.