Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02312.C3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1885
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.29


Found at i:780 original size:44 final size:44

Alignment explanation


    Indices: 717--803  Score: 174
    Period size: 44  Copynumber: 2.0  Consensus size: 44

        707 TGTCCTAGCG

                                                        
        717 ATATCCAATATTATGCTATGCATCATTTCTGGGCTATAAGAGAA
          1 ATATCCAATATTATGCTATGCATCATTTCTGGGCTATAAGAGAA

                                                       
        761 ATATCCAATATTATGCTATGCATCATTTCTGGGCTATAAGAGA
          1 ATATCCAATATTATGCTATGCATCATTTCTGGGCTATAAGAGA

        804 TGTAATTCCG


Statistics
Matches: 43,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  44   43  1.00

ACGTcount: A:0.33, C:0.16, G:0.16, T:0.34


Consensus pattern (44 bp):   
ATATCCAATATTATGCTATGCATCATTTCTGGGCTATAAGAGAA
Done.