Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02317.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3183
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.34


Found at i:171 original size:21 final size:21

Alignment explanation


    Indices: 142--191  Score: 52
    Period size: 20  Copynumber: 2.5  Consensus size: 21

        132 TTTTAAAAAC

                *                 
        142 TTTTCCTTTCTTCT-AGTTCTT
          1 TTTTTCTTTCTT-TGAGTTCTT

                           *     
        163 TTTTTCTTT-TTTGATTTCTT
          1 TTTTTCTTTCTTTGAGTTCTT

                      
        183 TTTTT-TTTC
          1 TTTTTCTTTC

        192 CCCACTTATT


Statistics
Matches: 25,  Mismatches: 2, Indels: 5
        0.78            0.06        0.16

Matches are distributed among these distances:
  19    4  0.16
  20   13  0.52
  21    8  0.32

ACGTcount: A:0.04, C:0.16, G:0.04, T:0.76


Consensus pattern (21 bp):   
TTTTTCTTTCTTTGAGTTCTT
Done.