Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02329.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3957
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.32


Found at i:2521 original size:90 final size:90

Alignment explanation


    Indices: 2368--2640  Score: 465
    Period size: 90  Copynumber: 3.0  Consensus size: 90

       2358 TTTAGGGATA

                                                 *           *               
       2368 AAAAACAGGTCACCAGGAAAGAGGGCTCAGCTATGATGTCAAAGGAGATGAATGTGAAGTCTACA
          1 AAAAACAGGTCACCAGGAAAGAGGGCTCAGCTATGATCTCAAAGGAGATAAATGTGAAGTCTACA

                         **       *  
       2433 TCATTCAGCAAGGAAAATAGCAACC
         66 TCATTCAGCAAGGGGAATAGCAGCC

                                                            *                
       2458 AAAAACAGGTCACCAGGAAAGAGGGCTCAGCTATGATCTCAAAGGAGACAAATGTGAAGTCTACA
          1 AAAAACAGGTCACCAGGAAAGAGGGCTCAGCTATGATCTCAAAGGAGATAAATGTGAAGTCTACA

                *                    
       2523 TCATCCAGCAAGGGGAATAGCAGCC
         66 TCATTCAGCAAGGGGAATAGCAGCC

                                                *                            
       2548 AAAAACAGGTCACCAGGAAAGAGGGCTCAGCTATGAACTCAAAGGAGATAAATGTGAAGTCTACA
          1 AAAAACAGGTCACCAGGAAAGAGGGCTCAGCTATGATCTCAAAGGAGATAAATGTGAAGTCTACA

                      *              
       2613 TCATTCAGCAGGGGGAATAGCAGCC
         66 TCATTCAGCAAGGGGAATAGCAGCC

               
       2638 AAA
          1 AAA

       2641 GACCTGGAGA


Statistics
Matches: 172,  Mismatches: 11, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  90  172  1.00

ACGTcount: A:0.40, C:0.19, G:0.25, T:0.15


Consensus pattern (90 bp):   
AAAAACAGGTCACCAGGAAAGAGGGCTCAGCTATGATCTCAAAGGAGATAAATGTGAAGTCTACA
TCATTCAGCAAGGGGAATAGCAGCC
Done.