Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g02337.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4189
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.31


Found at i:3096 original size:85 final size:85

Alignment explanation


    Indices: 2949--3119  Score: 306
    Period size: 85  Copynumber: 2.0  Consensus size: 85

       2939 AAAAGTAGAC

                                                                             
       2949 ATTTATTGTAATTGTATAAGAATGTCAAATTTGAAGAGTAAGGTGATTGTTTACATGAGAAATTC
          1 ATTTATTGTAATTGTATAAGAATGTCAAATTTGAAGAGTAAGGTGATTGTTTACATGAGAAATTC

            *                   
       3014 TTACAGCAGGTTTGTTAGGG
         66 CTACAGCAGGTTTGTTAGGG

                      *        *                                     *       
       3034 ATTTATTGTATTTGTATAATAATGTCAAATTTGAAGAGTAAGGTGATTGTTTACATGCGAAATTC
          1 ATTTATTGTAATTGTATAAGAATGTCAAATTTGAAGAGTAAGGTGATTGTTTACATGAGAAATTC

                                
       3099 CTACAGCAGGTTTGTTAGGG
         66 CTACAGCAGGTTTGTTAGGG

             
       3119 A
          1 A

       3120 ACTATGATTG


Statistics
Matches: 82,  Mismatches: 4, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  85   82  1.00

ACGTcount: A:0.32, C:0.07, G:0.23, T:0.38


Consensus pattern (85 bp):   
ATTTATTGTAATTGTATAAGAATGTCAAATTTGAAGAGTAAGGTGATTGTTTACATGAGAAATTC
CTACAGCAGGTTTGTTAGGG
Done.